JondaXModule

JondaX Pathology

Transform lab results from any specimen type, any format, any language into clean, coded, system-ready output. Core for digital files. Pro for scans, photos, and complex documents with OCR and human-in-the-loop verification.

Coded to your standard10+ languagesFHIR, HL7, JSON, CSV output
Pathology lab report being structured into coded clinical data
The problem

Every new lab costs you months.

Lab reports arrive as PDFs, scans, HL7 messages, and photos. Every lab uses different terminology, different units, different coding conventions.

Getting each new lab into your pipeline means writing extraction logic, building harmonisation rules, validating edge cases, and maintaining all of it when templates change. Months of engineering work per lab, before a single result reaches your product.

See how JondaX handles this →
Two tiers

Core for digital files. Pro for everything else.

Choose based on your input quality. Mix and match across your pipeline.

Live

Pathology Core

For digitally-generated files

  • De-identification
  • File normalisation (rotation, skew, formatting)
  • Multi-language processing (10+ languages)
  • Unit harmonisation (mmol/L, mg/dL, and more) using internationally recognised conversions
  • Coded to your standard, FHIR or HL7 output
  • Human-in-the-loop verification via two-step independent review by our in-house team for low-confidence data
  • Full traceability
Inputs
FHIRJSONHL7 v2
Outputs
HL7 v2FHIR XMLFHIR JSONCSVJSON
Live

Pathology Pro

For scans, photos, low-quality and non-digital inputs

  • Everything in Pathology Core
  • OCR for scans, photos, and low-quality documents
  • Supports BMP, HEIC, JPG, JPEG, GIF, and WEBP image formats
  • Robust layout handling across lab templates
  • Advanced QA checks
  • Anomaly and inconsistency detection
Inputs
Scanned PDFPhoto / imageLow-quality PDFMulti-format
Specimen coverage

More than blood biomarkers.

JondaX Pathology handles the full range of clinical laboratory specimens, not just standard blood panels.

Blood and haematology

From full blood count, metabolic, lipid, liver, and kidney panels to hormones, vitamins, tumour markers, inflammatory markers, cardiovascular markers, and less common blood-based biomarkers.

Urine analysis

Urinalysis, urine culture, spot and 24-hour collections, dipstick results, microscopy findings, and quantitative urine measurements.

Stool and faecal samples

Faecal occult blood, stool culture, parasitology, calprotectin, H. pylori antigen, and other gastrointestinal markers reported in lab results.

CSF and specialist fluids

CSF cell count, protein, glucose, culture, and other specialist markers reported in structured or semi-structured laboratory reports.

Sputum and respiratory specimens

Sputum cultures, respiratory pathogen panels, AFB smears, microbiology findings, and related laboratory results from respiratory specimens.

Microbiology and culture

Blood cultures, wound swabs, sensitivity results, antibiogram data, organism identification, and culture results from different specimen sources.

Other pathology reports

JondaX can support additional pathology report types depending on format, structure, language, terminology, and output requirements.

What you get back

Structured, coded, system-ready.

  • Coded to your standard on every biomarker
  • Harmonised units (SI or your preferred system) using internationally recognised conversions
  • Reference range included where available
  • Source language preserved for traceability
  • Confidence score on every extraction
  • Output in FHIR JSON, FHIR XML, HL7 v2, JSON, or CSV
// Input: scanned Bahasa Indonesia lab report
{
  "loinc_code": "6690-2",
  "display": "Leukocytes in Blood",
  "value": 7.2,
  "unit": "10*3/uL",
  "reference_range": "4.5-11.0",
  "interpretation": "N",
  "confidence": 0.98,
  "source_language": "id-ID",
  "source_text": "Leukosit 7.2"
}
Pathology FAQ

Questions about JondaX Pathology.

No credit card30 free transformsHIPAA regulation-ready
01What is the difference between Pathology Core and Pathology Pro?

Pathology Core handles digitally-generated files: HL7 v2, FHIR, and JSON. Pathology Pro handles everything else: scanned documents, photographs of lab reports, low-quality PDFs, and complex multi-page reports. Pro includes OCR, robust layout handling across lab templates, and anomaly and inconsistency detection. Both tiers include human-in-the-loop verification via two-step independent review by our in-house team for low-confidence data. Choose based on your input quality. You can mix and match across your pipeline.

02What specimen types does JondaX Pathology support?

Blood and haematology (full blood count, metabolic, lipid, liver, kidney panels, hormones, vitamins, tumour markers, inflammatory and cardiovascular markers), urine analysis, stool and faecal samples, CSF and specialist fluids, sputum and respiratory specimens, and microbiology and culture. JondaX can also support additional pathology report types depending on format, structure, language, terminology, and output requirements. Contact us if your specimen type is not listed.

03How does JondaX handle lab reports in different languages?

JondaX processes lab reports in 10+ languages natively, including English, Bahasa Indonesia, Spanish, French, German, Italian, Polish, and Turkish. The source language is auto-detected. Biomarker names, values, units, and reference ranges are identified in the source language, harmonised, and returned as structured output coded to your standard. The source language and source text are preserved in the output for traceability.

04What coding systems does JondaX Pathology support?

JondaX maps to your chosen coding standard. LOINC is live. SNOMED CT is on the roadmap. Output is coded to your standard, not a tool-imposed default. You configure your coding preferences once on the JondaX platform.

05What output formats are available?

FHIR JSON, FHIR XML, HL7 v2, JSON, or CSV. You configure your default output format on the JondaX platform. Output format can also be specified per API call for clients who need different formats for different downstream systems.

06How does human-in-the-loop review work?

Every field of data is confidence-scored. Fields below the confidence threshold go to expert review before your system receives the data. Our reviewers are an in-house team, not sub-processors. They work with the de-identified version of your data only. Every review is verified by a second reviewer before the record is returned. This two-step independent review process is how we maintain accuracy across diverse lab formats, languages, and templates.

07What image formats does Pathology Pro accept?

Pathology Pro accepts BMP, HEIC, JPG, JPEG, GIF, and WEBP image formats, as well as scanned PDFs, low-quality PDFs, and multi-format documents. OCR handles text extraction from these inputs, with layout detection for diverse lab report templates.

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